| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Angry Eyes | 1 | 1 | Friday March 9, 2007 |
| Those Who Call for War | 1 | 2 | Friday March 16, 2007 |
| Warning Shots | 1 | 3 | Friday March 23, 2007 |
| Stardust Battlefield | 1 | 4 | Friday March 30, 2007 |
| Scars That Won't Heal | 1 | 5 | Friday April 6, 2007 |
| The End of the World | 1 | 6 | Friday April 13, 2007 |
| Land of Confusion | 1 | 7 | Friday April 20, 2007 |
| Junction | 1 | 8 | Friday April 27, 2007 |
| Bared Fangs | 1 | 9 | Friday May 4, 2007 |
| A Father's Spell | 1 | 10 | Friday May 11, 2007 |
| The Chosen Path | 1 | 11 | Friday May 18, 2007 |
| Blood in the Water | 1 | 12 | Friday May 25, 2007 |
| Resurrected Wings | 1 | 13 | Friday June 1, 2007 |
| Flight to Tomorrow | 1 | 14 | Friday June 8, 2007 |
| Return to the Battlefield | 1 | 15 | Friday June 15, 2007 |
| Struggle in the Indian Ocean | 1 | 16 | Friday June 29, 2007 |
| The Soldier's Life | 1 | 17 | Friday July 6, 2007 |
| The Unseen Truth | 1 | 19 | Saturday February 26, 2005 |
| Past | 1 | 20 | Saturday March 5, 2005 |
| Roaming Eyes | 1 | 21 | Saturday March 12, 2005 |
| The Sword of the Azure Sky | 1 | 22 | Saturday March 19, 2005 |
| War's Shadow | 1 | 23 | Monday January 1, 2007 |
| Crossing Glances | 1 | 24 | Saturday April 2, 2005 |
| The Place of Sin | 1 | 25 | Saturday April 9, 2005 |
| Promise | 1 | 26 | Saturday April 16, 2005 |
| Unreachable Feelings | 1 | 27 | Saturday April 23, 2005 |
| Remaining Life, Scattered Life | 1 | 28 | Saturday April 30, 2005 |
| Fates | 1 | 29 | Saturday May 7, 2005 |
| Ephemeral Dream | 1 | 30 | Saturday May 14, 2005 |
| The Neverending Night | 1 | 31 | Saturday May 21, 2005 |
| Stellar | 1 | 32 | Saturday May 28, 2005 |
| Revelation of the World | 1 | 33 | Saturday June 4, 2005 |
| Nightmare | 1 | 34 | Saturday June 11, 2005 |
| Chaos Ahead | 1 | 35 | Saturday June 18, 2005 |
| Athrun Deserts | 1 | 36 | Saturday June 25, 2005 |
| The Darkness of Thunder | 1 | 37 | Saturday July 2, 2005 |
| A New Flag | 1 | 38 | Saturday July 9, 2005 |
| Kira of the Heavens | 1 | 39 | Saturday July 16, 2005 |
| The Golden Purpose | 1 | 40 | Saturday July 23, 2005 |
| Refrain | 1 | 41 | Saturday July 30, 2005 |
| Freedom and Justice | 1 | 42 | Saturday August 6, 2005 |
| Counteroffensive Voice | 1 | 43 | Saturday August 13, 2005 |
| Two Lacus | 1 | 44 | Saturday August 20, 2005 |
| Revolutionary Overture | 1 | 45 | Saturday August 27, 2005 |
| The Song of Truth | 1 | 46 | Saturday September 3, 2005 |
| Meer | 1 | 47 | Saturday September 10, 2005 |
| To A New World | 1 | 48 | Saturday September 17, 2005 |
| Rey | 1 | 49 | Saturday September 24, 2005 |
| The Final Power | 1 | 50 | Thursday January 20, 2005 |
| Final Plus-The Chosen Future | 1 | 51 | Thursday January 20, 2005 |