| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Memories of the Wind | 2 | 52 | Saturday March 26, 2005 |
| A Messenger from Meteoric Shower | 2 | 53 | Saturday September 10, 2005 |
| The Space Ship Blue Typhoon | 2 | 54 | Saturday September 17, 2005 |
| The Water Planet, Hydoo | 2 | 55 | Saturday September 24, 2005 |
| Eggman Enters into the War! | 2 | 56 | Saturday October 1, 2005 |
| The Battle of Ice Palace! | 2 | 57 | Saturday October 8, 2005 |
| Young Girl's Jungle Trap | 2 | 58 | Saturday October 15, 2005 |
| Chaotix Goes Into Space | 2 | 59 | Saturday October 22, 2005 |
| The Return of Shadow | 2 | 60 | Saturday October 29, 2005 |
| The Vessel of Evil | 2 | 61 | Saturday November 5, 2005 |
| The Underground Secret | 2 | 62 | Saturday November 12, 2005 |
| The Base of the Metarex | 2 | 63 | Saturday November 19, 2005 |
| Sonic Vs. Shadow | 2 | 64 | Saturday November 26, 2005 |
| Celebration Aboard the Typhoon | 2 | 65 | Saturday December 3, 2005 |
| A Critical Situation | 2 | 66 | Saturday February 4, 2006 |
| The Black Trap | 2 | 67 | Saturday February 11, 2006 |
| Molly's Dream | 2 | 68 | Saturday February 18, 2006 |
| Planet Marmolim | 2 | 69 | Saturday February 25, 2006 |
| The Fatal Swirl | 2 | 70 | Saturday March 4, 2006 |
| The Incredible Blow | 2 | 71 | Saturday March 11, 2006 |
| Who Are the Metarex? | 2 | 72 | Saturday March 18, 2006 |
| Shadow's Arrival | 2 | 73 | Saturday April 1, 2006 |
| The Lost Planet | 2 | 74 | Saturday April 8, 2006 |
| The Day of the Planatations | 2 | 75 | Saturday April 15, 2006 |
| Concerns for Sonic | 2 | 76 | Saturday April 22, 2006 |
| Cosmo's Work | 2 | 77 | Saturday April 29, 2006 |
| The Rebirth of the Planets | 2 | 78 | Saturday May 6, 2006 |