| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Cobra World | 4 | 134 | |
| Cobra's Candidate | 1 | 30 | Friday October 11, 1985 |
| Cobra's Creatures | 1 | 21 | Monday September 30, 1985 |
| Cobrathon | 2 | 77 | Monday October 6, 1986 |
| Cold Shoulder | 3 | 113 | |
| Cold Slither | 1 | 61 | Monday December 2, 1985 |
| Computer Complications | 2 | 72 | Friday September 26, 1986 |
| Countdown for Zartan | 1 | 16 | Monday September 23, 1985 |
| D-Day at Alcatraz - Part One | 3 | 116 | |
| D-Day at Alcatraz - Part Two | 3 | 117 | |
| Eau de Cobra | 1 | 48 | Wednesday November 6, 1985 |
| El Dorado, The Lost City of Gold | 4 | 123 | |
| Excalibur | 1 | 45 | Friday November 1, 1985 |
| Flint's Vacation | 1 | 53 | Wednesday November 13, 1985 |
| G.I. Joe and the Golden Fleece | 2 | 87 | Monday October 27, 1986 |
| G.I. Joe: The Movie | 2 | 96 | Thursday January 1, 1987 |
| General Confusion | 3 | 110 | |
| Glamour Girls | 2 | 79 | Wednesday October 8, 1986 |
| Granny Dearest | 3 | 104 | |
| Grey Hairs and Growing Pains | 2 | 82 | Tuesday October 14, 1986 |
| Haul Down the Heavens | 1 | 25 | Friday October 4, 1985 |
| Hearts and Cannons | 1 | 54 | Thursday November 14, 1985 |
| I Found you...Evy | 3 | 108 | |
| Iceberg Goes South | 2 | 80 | Thursday October 9, 1986 |
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