| Title | Season | Episode # | First Aired |
|---|---|---|---|
| 20,000 Leaks Under The Sea | 1 | 7 | Sunday October 23, 1994 |
| Bad Day at Peril Park | 2 | 25 | Sunday November 26, 1995 |
| Bot Transfer | 1 | 9 | Sunday November 6, 1994 |
| Brain Bot | 2 | 23 | Sunday November 12, 1995 |
| Bro Bots | 2 | 24 | Sunday November 19, 1995 |
| Campus Commandos | 2 | 22 | Sunday November 5, 1995 |
| Cold Steel | 1 | 11 | Sunday November 20, 1994 |
| Crime of the Century | 2 | 28 | Sunday December 10, 1995 |
| Curse of the Lion Men | 2 | 20 | Sunday October 22, 1995 |
| Dr. Wily's Strange Island | 1 | 13 | Sunday December 4, 1994 |
| Electric Nightmare | 1 | 2 | Sunday September 18, 1994 |
| Future Shock | 1 | 12 | Sunday November 27, 1994 |
| Ice Age | 1 | 10 | Sunday November 13, 1994 |
| Master of Disaster | 2 | 18 | Sunday October 8, 1995 |
| Mega Dreams | 2 | 16 | Sunday September 24, 1995 |
| Mega Man in the Moon | 1 | 6 | Tuesday October 11, 1994 |
| Mega-Pinocchio | 1 | 3 | Sunday September 25, 1994 |
| Night of the Living Monster Bots | 2 | 19 | Sunday October 15, 1995 |
| Robo-Spider | 2 | 17 | Sunday October 1, 1995 |
| Robosaur Park | 1 | 5 | Sunday October 9, 1994 |
| Showdown at Red Gulch | 2 | 14 | Sunday September 10, 1995 |
| Terror of the Seven Seas | 2 | 15 | Sunday September 17, 1995 |
| The Beginning | 1 | 1 | Sunday September 11, 1994 |
| The Big Shake | 1 | 4 | Sunday October 2, 1994 |
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