| Title | Season | Episode # | First Aired |
|---|---|---|---|
| The Race Is On! Trouble on the High Seas! | 4 | 103 | Saturday September 15, 2007 |
| The Ressurected Beasts | 10 | 248 | Thursday September 13, 2007 |
| The Result of the Betrayal | 11 | 265 | Thursday January 31, 2008 |
| The Resurrected Ultimate Weapon | 9 | 219 | Thursday February 1, 2007 |
| The Retired Old Woman's Determination | 10 | 232 | Thursday May 3, 2007 |
| The Sand Shinobi: Allies of the Leaf | 5 | 125 | Saturday December 22, 2007 |
| The Scroll's Secret: No Peeking Allowed | 2 | 35 | Saturday May 27, 2006 |
| The Sealed Sand Water Tiger's Counterattack | 9 | 218 | Thursday January 25, 2007 |
| The Search for the Rare Bikochu Beetle! | 6 | 148 | Saturday March 15, 2008 |
| The Secrets of the Mangekyo Sharingan! | 6 | 131 | Saturday January 12, 2008 |
| The Sharingan Revived: Dragon Flame Jutsu! | 2 | 30 | Saturday April 22, 2006 |
| The Star That Shines Brighter | 8 | 183 | Wednesday May 3, 2006 |
| The Tactician's Intent | 7 | 163 | Saturday May 3, 2008 |
| The Targeted Eight Clouds, The Sealed Ability | 9 | 204 | Thursday October 5, 2006 |
| The Tenth Question: All or Nothing | 1 | 25 | Saturday February 25, 2006 |
| The Third Great Beast, The Greatest Rival | 8 | 195 | Wednesday July 26, 2006 |
| The Third Hokage, Forever... | 4 | 80 | Saturday March 24, 2007 |
| The Third Kazekage | 10 | 244 | Thursday August 9, 2007 |
| The Three Villains from the Maximum Security Prison | 6 | 142 | Saturday February 23, 2008 |
| The Ultimate Battle: Cha! | 2 | 42 | Saturday July 15, 2006 |
| The Unfinished Page | 11 | 266 | Thursday February 7, 2008 |
| The Vessel Arrives Too Late | 5 | 118 | Saturday December 1, 2007 |
| The Weapons Known as Shinobi | 1 | 18 | Saturday January 7, 2006 |
| The Will of Fire Still Burns | 4 | 99 | Saturday August 4, 2007 |
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