| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Sound vs. Leaf | 5 | 111 | Saturday October 27, 2007 |
| Special Report Live From the Forest of Death | 1 | 26 | Saturday March 4, 2006 |
| Sprinting Kankuro | 10 | 227 | Thursday March 29, 2007 |
| Squad Mutiny: Everything Falls Apart! | 5 | 112 | Saturday November 3, 2007 |
| Squirm | 12 | 276 | Thursday April 24, 2008 |
| Start Your Engines: The Chunin Exam Begins | 1 | 24 | Saturday February 18, 2006 |
| Summoning Jutsu | 3 | 54 | Saturday October 7, 2006 |
| Suna's Allies, The Konoha Shinobi | 9 | 217 | Thursday January 18, 2007 |
| Surprise Attack! Naruto's Secret Weapon! | 2 | 45 | Saturday July 29, 2006 |
| Surviving the Cut! The Rookie Nine Together Again! | 2 | 37 | Saturday June 10, 2006 |
| Take Back Reality | 9 | 214 | Thursday December 21, 2006 |
| Teammate | 12 | 282 | Thursday June 5, 2008 |
| The Ability Which is Sealed | 9 | 207 | Thursday October 26, 2006 |
| The Adventures of Naruto!...Oh, and Everyone Else Too! / One on One: Every Genin For Themselves! | 2 | 52 | Saturday September 23, 2006 |
| The ANBU Also Gave Up, Naruto's Recollection | 8 | 198 | Wednesday August 23, 2006 |
| The Appearance of Strange Visitors | 7 | 161 | Saturday April 26, 2008 |
| The Assassin of the Mist! | 1 | 7 | Saturday October 15, 2005 |
| The Battle Begins: Naruto vs. Sasuke | 5 | 107 | Saturday October 13, 2007 |
| The Beast Within | 5 | 124 | Saturday December 22, 2007 |
| The Bounty Hunter from the Wilderness | 7 | 159 | Saturday April 19, 2008 |
| The Bridge of Heaven and Earth | 11 | 259 | Thursday December 13, 2007 |
| The Broken Seal | 1 | 16 | Saturday December 17, 2005 |
| The Closed Door | 7 | 170 | Saturday May 31, 2008 |
| The Cursed Warrior | 7 | 162 | Saturday May 3, 2008 |
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