| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Enter the Dragons (1) | 5 | 115 | Saturday April 26, 2008 |
| Enter the Dragons (2) | 5 | 116 | Saturday May 3, 2008 |
| Enter the Jammerhead | 6 | 133 | Saturday April 7, 2007 |
| Exodus (1) | 3 | 77 | Saturday April 16, 2005 |
| Exodus (2) | 3 | 78 | Saturday April 23, 2005 |
| Fall of Darius Dun | 6 | 135 | Saturday April 21, 2007 |
| Fallen Angel | 1 | 8 | Saturday March 29, 2003 |
| Fathers And Sons | 5 | 113 | Saturday April 12, 2008 |
| Fly Me to the Moon | 6 | 125 | Saturday November 4, 2006 |
| Future Shellshock! | 6 | 117 | Saturday July 29, 2006 |
| Garbageman | 1 | 9 | Saturday April 5, 2003 |
| Good Genes (1) | 4 | 102 | Saturday April 1, 2006 |
| Good Genes (2) | 4 | 103 | Saturday April 8, 2006 |
| Graduation Day: Class of 2105 | 6 | 131 | Saturday March 24, 2007 |
| Grudge Match | 4 | 85 | Saturday October 22, 2005 |
| H.A.T.E | 3 | 61 | Saturday December 4, 2004 |
| Head of State | 6 | 138 | Saturday September 15, 2007 |
| Headlock Prime | 6 | 120 | Saturday September 30, 2006 |
| Home Invasion | 6 | 119 | Saturday August 12, 2006 |
| Hun on the Run | 3 | 70 | Tuesday February 8, 2005 |
| Hunted | 3 | 60 | Saturday November 27, 2004 |
| I, Monster | 4 | 84 | Saturday October 15, 2005 |
| Insane in the Membrane | 4 | 97 | |
| Invasion of the Bodyjacker | 6 | 126 | Saturday November 11, 2006 |
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