| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Race For Glory! | 6 | 137 | Saturday September 8, 2007 |
| Reality Check (1) | 3 | 71 | Saturday March 5, 2005 |
| Reflections | 2 | 36 | Saturday February 14, 2004 |
| Return of Savanti (1) | 4 | 99 | Saturday March 11, 2006 |
| Return of Savanti (2) | 4 | 100 | Saturday March 18, 2006 |
| Return of the Justice Force | 2 | 48 | Saturday May 8, 2004 |
| Return to New York (1) | 1 | 21 | Saturday September 27, 2003 |
| Return to New York (2) | 1 | 22 | Saturday October 4, 2003 |
| Return to New York (3) | 1 | 23 | Saturday October 11, 2003 |
| Return to the Underground | 2 | 39 | Saturday March 6, 2004 |
| Rogue in the House (1) | 2 | 45 | Saturday April 17, 2004 |
| Rogue in the House (2) | 2 | 46 | Saturday April 24, 2004 |
| Same As It Never Was (3) | 3 | 73 | Thursday March 17, 2005 |
| Samurai Tourist | 4 | 91 | Saturday December 3, 2005 |
| Scion of the Shredder | 4 | 93 | Saturday February 4, 2006 |
| Secret Origins (1) | 2 | 32 | Saturday January 17, 2004 |
| Secret Origins (2) | 2 | 33 | Saturday January 24, 2004 |
| Secret Origins (3) | 2 | 34 | Saturday January 31, 2004 |
| Sons Of The Silent Age | 4 | 82 | Saturday October 1, 2005 |
| Space Invaders (1) | 3 | 53 | Saturday October 9, 2004 |
| Space Invaders (2) | 3 | 54 | Saturday October 16, 2004 |
| Space Invaders (3) | 3 | 55 | Saturday October 23, 2004 |
| Still Nobody | 4 | 90 | Saturday November 26, 2005 |
| Tales of Leo | 1 | 19 | Saturday September 13, 2003 |
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