| Title | Season | Episode # | First Aired |
|---|---|---|---|
| A Bridge Too Close Part 1 | 2 | 28 | |
| A Bridge Too Close Part 2 | 2 | 29 | |
| A Fistful of Energon | 2 | 23 | Saturday May 31, 2008 |
| Along Came a Spider | 1 | 9 | Saturday February 16, 2008 |
| Autoboot Camp | 2 | 25 | |
| Black Friday | 2 | 26 | |
| Blast From the Past | 1 | 5 | Saturday January 12, 2008 |
| Decepticon Air | 3 | 10 | Saturday May 2, 2009 |
| Endgame, Part I | 3 | 12 | Saturday May 16, 2009 |
| Endgame, Part II | 3 | 13 | Saturday May 23, 2009 |
| Five Servos of Doom | 3 | 6 | Saturday April 4, 2009 |
| Garbage In, Garbage Out | 2 | 20 | Saturday May 10, 2008 |
| Headmaster | 1 | 13 | Saturday March 15, 2008 |
| Home Is Where the Spark Is | 1 | 4 | Saturday January 5, 2008 |
| Human Error, Part I | 3 | 8 | Saturday April 18, 2009 |
| Human Error, Part II | 3 | 9 | Saturday April 25, 2009 |
| Lost and Found | 1 | 11 | Saturday March 1, 2008 |
| Megatron Rising - Part 1 | 1 | 15 | Saturday March 29, 2008 |
| Megatron Rising - Part 2 | 1 | 16 | Saturday April 5, 2008 |
| Mission Accomplished | 2 | 19 | Saturday May 3, 2008 |
| Nanosec | 1 | 7 | Saturday January 26, 2008 |
| Nature Calls | 1 | 14 | Saturday March 22, 2008 |
| Predacons Rising | 3 | 7 | Saturday April 11, 2009 |
| Return of the Headmaster | 2 | 18 | Saturday April 26, 2008 |
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