| Title | Season | Episode # | First Aired |
|---|---|---|---|
| In the Name of the Pharaoh | 5 | 219 | Saturday May 6, 2006 |
| Into The Hornet's Nest (1) | 1 | 4 | Monday October 1, 2001 |
| Isolated in Cyber Space (1) | 3 | 99 | Saturday November 8, 2003 |
| Isolated in Cyber Space (2) | 3 | 100 | Saturday November 8, 2003 |
| Isolated in Cyber Space (3) | 3 | 101 | Saturday November 15, 2003 |
| Journey to the Duelist Kingdom | 1 | 3 | Saturday October 13, 2001 |
| Keith's Machinations (1) | 1 | 31 | Saturday September 7, 2002 |
| Keith's Machinations (2) | 1 | 32 | Saturday September 7, 2002 |
| Legend of the Dragons | 4 | 147 | Saturday September 25, 2004 |
| Legendary Fisherman (1) | 2 | 68 | Saturday March 22, 2003 |
| Legendary Fisherman (2) | 2 | 69 | Saturday March 29, 2003 |
| Legendary Heroes (1) | 1 | 43 | Saturday October 19, 2002 |
| Legendary Heroes (2) | 1 | 44 | Saturday October 19, 2002 |
| Legendary Heroes (3) | 1 | 45 | Saturday October 26, 2002 |
| Let the Finals Begin! | 2 | 81 | Saturday August 30, 2003 |
| Let the Games Begin! (1) | 5 | 187 | Saturday September 3, 2005 |
| Let the Games Begin! (2) | 5 | 188 | Saturday September 3, 2005 |
| Lights, Camera, Duel | 2 | 80 | Saturday August 23, 2003 |
| Looking Back and Moving Ahead | 3 | 144 | Saturday September 4, 2004 |
| Makings of a Magician | 5 | 204 | Saturday November 19, 2005 |
| Mechanical Mayhem (1) | 3 | 106 | Saturday November 29, 2003 |
| Mechanical Mayhem (2) | 3 | 107 | Saturday December 6, 2003 |
| Memoirs of a Pharaoh | 5 | 201 | Saturday October 29, 2005 |
| Merger of the Big Five (1) | 3 | 111 | Saturday January 17, 2004 |
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